![]() |
Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
|
Home BLAST Prediction RegMap ATRM Download Help About Links |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Zpz_sc03531.1.g00030.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 468aa MW: 49913.9 Da PI: 6.9339 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57.6 | 3.1e-18 | 182 | 230 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr + +g+Wv+eIr+p++ + r++lg+f+t+e+Aa+a++ a+++++g Zpz_sc03531.1.g00030.1.am.mk 182 YRGVRMRA-WGKWVSEIREPRK---KSRIWLGTFDTPEMAARAHDVAALAIKG 230 9****998.**********843...6***********************9987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.3E-12 | 180 | 230 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 7.6E-32 | 181 | 239 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.222 | 181 | 238 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.7E-37 | 181 | 244 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.94E-21 | 181 | 238 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 3.5E-10 | 182 | 193 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.49E-30 | 182 | 239 | No hit | No description |
PRINTS | PR00367 | 3.5E-10 | 204 | 220 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 468 aa Download sequence Send to blast |
MLVVKVWIHY DPDAATDTST HMLQQYVDVA YIRARAHNHH PNGGVRVDQW SRCASVSFAT 60 ANRGALIVSC GRAFRPLPAL RRSVTWATRS PVEPVHGEGG NNRSIELTFL LRAIGATQLT 120 AACPVMGEER AMSPVSGASA TCSHHGGFSS SSSGPGSPLA SPESGAASSR KRPRRELKHP 180 AYRGVRMRAW GKWVSEIREP RKKSRIWLGT FDTPEMAARA HDVAALAIKG RAAHLNFPEM 240 SHELPRAASS APEDVRAAAA LAAAMQSAAP AASSDSSRGS AGCVEDDEAT QSRTAADASI 300 DSTHSACNDE NEEATPAAPS SSSDGGCNND DEEATQLDSH VMDLALFELP DVLREFGLAL 360 PPLTPCCDDF CWDEPLLLWQ HCGAGAEAKF AVAPALWYCL DWWSFGNGGQ GKVGRGGEGR 420 KKVQFGAAVE CTTESGVPVV ARPAKIARDR PSLADRQHMG VRSTTILT |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3gcc_A | 7e-14 | 178 | 238 | 2 | 63 | ATERF1 |
2gcc_A | 7e-14 | 178 | 238 | 2 | 63 | ATERF1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KJ728262 | 1e-114 | KJ728262.1 Zea mays clone pUT6539 AP2-EREBP transcription factor (EREB176) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_008646011.1 | 5e-85 | PREDICTED: ethylene-responsive transcription factor ERF043-like | ||||
TrEMBL | A0A096QGD3 | 1e-84 | A0A096QGD3_MAIZE; Uncharacterized protein | ||||
STRING | GRMZM2G041839_P01 | 3e-84 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP159 | 35 | 354 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G16750.1 | 3e-39 | ERF family protein |