PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Home  BLAST  Prediction  RegMap  ATRM  Download  Help  About  Links
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc03531.1.g00030.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 468aa    MW: 49913.9 Da    PI: 6.9339
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc03531.1.g00030.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.63.1e-18182230355
                           AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                   y+GVr +  +g+Wv+eIr+p++   + r++lg+f+t+e+Aa+a++ a+++++g
  Zpz_sc03531.1.g00030.1.am.mk 182 YRGVRMRA-WGKWVSEIREPRK---KSRIWLGTFDTPEMAARAHDVAALAIKG 230
                                   9****998.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.3E-12180230IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.6E-32181239IPR001471AP2/ERF domain
PROSITE profilePS5103223.222181238IPR001471AP2/ERF domain
SMARTSM003801.7E-37181244IPR001471AP2/ERF domain
SuperFamilySSF541712.94E-21181238IPR016177DNA-binding domain
PRINTSPR003673.5E-10182193IPR001471AP2/ERF domain
CDDcd000184.49E-30182239No hitNo description
PRINTSPR003673.5E-10204220IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 468 aa     Download sequence    Send to blast
MLVVKVWIHY DPDAATDTST HMLQQYVDVA YIRARAHNHH PNGGVRVDQW SRCASVSFAT  60
ANRGALIVSC GRAFRPLPAL RRSVTWATRS PVEPVHGEGG NNRSIELTFL LRAIGATQLT  120
AACPVMGEER AMSPVSGASA TCSHHGGFSS SSSGPGSPLA SPESGAASSR KRPRRELKHP  180
AYRGVRMRAW GKWVSEIREP RKKSRIWLGT FDTPEMAARA HDVAALAIKG RAAHLNFPEM  240
SHELPRAASS APEDVRAAAA LAAAMQSAAP AASSDSSRGS AGCVEDDEAT QSRTAADASI  300
DSTHSACNDE NEEATPAAPS SSSDGGCNND DEEATQLDSH VMDLALFELP DVLREFGLAL  360
PPLTPCCDDF CWDEPLLLWQ HCGAGAEAKF AVAPALWYCL DWWSFGNGGQ GKVGRGGEGR  420
KKVQFGAAVE CTTESGVPVV ARPAKIARDR PSLADRQHMG VRSTTILT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3gcc_A7e-14178238263ATERF1
2gcc_A7e-14178238263ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7282621e-114KJ728262.1 Zea mays clone pUT6539 AP2-EREBP transcription factor (EREB176) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008646011.15e-85PREDICTED: ethylene-responsive transcription factor ERF043-like
TrEMBLA0A096QGD31e-84A0A096QGD3_MAIZE; Uncharacterized protein
STRINGGRMZM2G041839_P013e-84(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16750.13e-39ERF family protein